Motif J3_05025.2 Version J3_05025.2 of this group appears in releases 4.7 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-11 | 4-12 | 6-7 | 9-10 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8P9A_053 | 8P9A | 0.0744 | 1 | AR | LSU rRNA | U | 1479 | G | 1480 | A | 1481 | G | 1483 | U | 1484 | G | 1485 | * | C | 1857 | A | 1858 | A | 1859 | * | U | 1871 | C | 1872 | U | 1873 | A | 1874 | cWW | tSH | ntHW | tWW | cWW | cWW |
| 2 | J3_8OI5_012 | 8OI5 | 0.0636 | 1 | 1 | LSU rRNA | U | 1475 | G | 1476 | A | 1477 | G | 1479 | U | 1480 | G | 1481 | * | C | 1853 | A | 1854 | A | 1855 | * | U | 1867 | C | 1868 | U | 1869 | A | 1870 | cWW | tSH | tHW | tWW | cWW | cWW |
| 3 | J3_9AXU_013 | 9AXU | 0.0000 | 1 | 2 | LSU rRNA | U | 1513 | G | 1514 | A | 1515 | G | 1517 | U | 1518 | G | 1519 | * | C | 1912 | A | 1913 | A | 1914 | * | U | 1926 | C | 1927 | U | 1928 | A | 1929 | cWW | tSH | tHW | tWW | cWW | cWW |
| 4 | J3_8GLP_004 | 8GLP | 0.0430 | 1 | L5 | LSU rRNA | C | 2393 | G | 2394 | A | 2395 | G | 2397 | U | 2398 | G | 2399 | * | C | 2805 | A | 2806 | A | 2807 | * | U | 2819 | C | 2820 | U | 2821 | G | 2822 | cWW | tSH | tHW | tWW | cWW | cWW |
| 5 | J3_9H3G_015 | 9H3G | 0.0742 | 1 | A | LSU rRNA | C | 1488 | G | 1489 | A | 1490 | G | 1492 | A | 1493 | G | 1494 | * | C | 1859 | A | 1860 | A | 1861 | * | U | 1873 | C | 1874 | U | 1875 | G | 1876 | cWW | tSH | tHW | tWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAGUG*CAA*UCUA | 3 |
| CGAAGUG*CAA*UCUG | 1 |
| CGAAGAG*CAA*UCUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGU*A*CU | 4 |
| GAAGA*A*CU | 1 |
Release history
| Release | 4.7 |
|---|---|
| Date | 2026-02-25 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-tSH-tWW-tHW-cWW-F-cWW-F
- Heat map statistics
- Min 0.04 | Avg 0.06 | Max 0.12
Coloring options: