3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
AUUC*GGACCAGAG*CAUUU
Length
18 nucleotides
Bulged bases
8UJ9|1|S2|G|991
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UJ9_032 not in the Motif Atlas
Homologous match to J3_8P9A_074
Geometric discrepancy: 0.1162
The information below is about J3_8P9A_074
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_23895.1
Basepair signature
cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8UJ9|1|S2|A|938
8UJ9|1|S2|U|939
8UJ9|1|S2|U|940
8UJ9|1|S2|C|941
*
8UJ9|1|S2|G|985
8UJ9|1|S2|G|986
8UJ9|1|S2|A|987
8UJ9|1|S2|C|988
8UJ9|1|S2|C|989
8UJ9|1|S2|A|990
8UJ9|1|S2|G|991
8UJ9|1|S2|A|992
8UJ9|1|S2|G|993
*
8UJ9|1|S2|C|1000
8UJ9|1|S2|A|1001
8UJ9|1|S2|U|1002
8UJ9|1|S2|U|1003
8UJ9|1|S2|U|1004

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain Lp
60S ribosomal protein L37a
Chain SB
40S ribosomal protein S3a
Chain SN
40S ribosomal protein S13
Chain SO
Small ribosomal subunit protein uS11
Chain Sa
40S ribosomal protein S26

Coloring options:


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