3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
CCAG*CCAGUAA*UGAUUAAG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UJ9_034 not in the Motif Atlas
Homologous match to J3_8P9A_076
Geometric discrepancy: 0.1379
The information below is about J3_8P9A_076
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85722.1
Basepair signature
cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
Number of instances in this motif group
5

Unit IDs

8UJ9|1|S2|C|1218
8UJ9|1|S2|C|1219
8UJ9|1|S2|A|1220
8UJ9|1|S2|G|1221
*
8UJ9|1|S2|C|1645
8UJ9|1|S2|C|1646
8UJ9|1|S2|A|1647
8UJ9|1|S2|G|1648
8UJ9|1|S2|U|1649
8UJ9|1|S2|A|1650
8UJ9|1|S2|A|1651
*
8UJ9|1|S2|U|1673
8UJ9|1|S2|G|1674
8UJ9|1|S2|A|1675
8UJ9|1|S2|U|1676
8UJ9|1|S2|U|1677
8UJ9|1|S2|A|1678
8UJ9|1|S2|A|1679
8UJ9|1|S2|G|1680

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain SF
40S ribosomal protein S5
Chain SQ
Small ribosomal subunit protein uS9
Chain Sc
40S ribosomal protein S28

Coloring options:


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