J3_8UJB_012

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8UJB|1|L5|A|2396, 8UJB|1|L5|U|2398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UJB_012 not in the Motif Atlas

Homologous match to J3_8P9A_053

Geometric discrepancy: 0.1561

The information below is about J3_8P9A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05025.1

Basepair signature

cWW-tSH-tWW-tHW-cWW-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8UJB|1|L5|C|2393
8UJB|1|L5|G|2394
8UJB|1|L5|A|2395
8UJB|1|L5|A|2396
8UJB|1|L5|G|2397
8UJB|1|L5|U|2398
8UJB|1|L5|G|2399
*
8UJB|1|L5|C|2805
8UJB|1|L5|A|2806
8UJB|1|L5|A|2807
*
8UJB|1|L5|U|2819
8UJB|1|L5|C|2820
8UJB|1|L5|U|2821
8UJB|1|L5|G|2822

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34