3D structure

PDB id
8UJK (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ HHT and CHX treated A-P-Z state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.54 Å

Loop

Sequence
AUUC*GGACCAGAG*CAUUU
Length
18 nucleotides
Bulged bases
8UJK|1|S2|G|991
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UJK_031 not in the Motif Atlas
Homologous match to J3_8P9A_074
Geometric discrepancy: 0.1076
The information below is about J3_8P9A_074
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_23895.1
Basepair signature
cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8UJK|1|S2|A|938
8UJK|1|S2|U|939
8UJK|1|S2|U|940
8UJK|1|S2|C|941
*
8UJK|1|S2|G|985
8UJK|1|S2|G|986
8UJK|1|S2|A|987
8UJK|1|S2|C|988
8UJK|1|S2|C|989
8UJK|1|S2|A|990
8UJK|1|S2|G|991
8UJK|1|S2|A|992
8UJK|1|S2|G|993
*
8UJK|1|S2|C|1000
8UJK|1|S2|A|1001
8UJK|1|S2|U|1002
8UJK|1|S2|U|1003
8UJK|1|S2|U|1004

Current chains

Chain S2
18S rRNA

Nearby chains

Chain Lp
60S ribosomal protein L37a
Chain SB
40S ribosomal protein S3a
Chain SN
40S ribosomal protein S13
Chain SO
Small ribosomal subunit protein uS11
Chain Sa
40S ribosomal protein S26

Coloring options:


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