J3_8UPO_009

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

8UPO|1|D|U|1240, 8UPO|1|D|C|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UPO_009 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1201

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

8UPO|1|D|C|1237
8UPO|1|D|A|1238
8UPO|1|D|A|1239
8UPO|1|D|U|1240
8UPO|1|D|G|1241
*
8UPO|1|D|C|1296
8UPO|1|D|G|1297
8UPO|1|D|U|1298
8UPO|1|D|A|1299
8UPO|1|D|G|1300
8UPO|1|D|U|1301
8UPO|1|D|C|1302
8UPO|1|D|C|1303
*
8UPO|1|D|G|1334
8UPO|1|D|U|1335
8UPO|1|D|C|1336
8UPO|1|D|G|1337

Current chains

Chain D

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S7

Chain X

30S ribosomal protein S13