J3_8UPO_018
3D structure
- PDB id
- 8UPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 8UPO|1|a|U|2833, 8UPO|1|a|A|2835
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UPO_018 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1239
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8UPO|1|a|G|2812
8UPO|1|a|A|2813
8UPO|1|a|A|2814
8UPO|1|a|C|2815
*
8UPO|1|a|G|2831
8UPO|1|a|U|2832
8UPO|1|a|U|2833
8UPO|1|a|G|2834
8UPO|1|a|A|2835
8UPO|1|a|U|2836
*
8UPO|1|a|A|2882
8UPO|1|a|A|2883
8UPO|1|a|U|2884
8UPO|1|a|G|2885
8UPO|1|a|A|2886
8UPO|1|a|A|2887
8UPO|1|a|C|2888
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain i
- 50S ribosomal protein L32
- Chain j
- 50S ribosomal protein L3
- Chain w
- 50S ribosomal protein L17
Coloring options: