J3_8UPO_029

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UPO_029 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0652

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

8UPO|1|a|G|30
8UPO|1|a|C|31
*
8UPO|1|a|G|474
8UPO|1|a|C|475
8UPO|1|a|G|476
8UPO|1|a|A|477
8UPO|1|a|A|478
8UPO|1|a|A|479
8UPO|1|a|A|480
8UPO|1|a|G|481
*
8UPO|1|a|C|509
8UPO|1|a|C|510

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain 3

50S ribosomal protein L24

Chain z

50S ribosomal protein L20