J3_8UPR_004
3D structure
- PDB id
- 8UPR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 8UPR|1|D|A|975, 8UPR|1|D|G|976, 8UPR|1|D|A|978
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UPR_004 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0764
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8UPR|1|D|U|955
8UPR|1|D|U|956
8UPR|1|D|U|957
8UPR|1|D|A|958
8UPR|1|D|A|959
8UPR|1|D|U|960
8UPR|1|D|U|961
8UPR|1|D|C|962
*
8UPR|1|D|G|973
8UPR|1|D|A|974
8UPR|1|D|A|975
8UPR|1|D|G|976
8UPR|1|D|A|977
8UPR|1|D|A|978
8UPR|1|D|C|979
8UPR|1|D|C|980
8UPR|1|D|U|981
8UPR|1|D|U|982
8UPR|1|D|A|983
8UPR|1|D|C|984
*
8UPR|1|D|G|1221
8UPR|1|D|G|1222
8UPR|1|D|C|1223
8UPR|1|D|U|1224
8UPR|1|D|A|1225
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain O
- 30S ribosomal protein S9
- Chain P
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
- Chain W
- 30S ribosomal protein S19
- Chain X
- 30S ribosomal protein S13
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