J3_8UPR_030

3D structure

PDB id

8UPR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8UPR|1|a|A|504, 8UPR|1|a|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UPR_030 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1051

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.2

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

8UPR|1|a|G|30
8UPR|1|a|C|31
*
8UPR|1|a|G|474
8UPR|1|a|C|475
8UPR|1|a|G|476
8UPR|1|a|A|477
8UPR|1|a|A|478
8UPR|1|a|A|479
8UPR|1|a|A|480
8UPR|1|a|G|481
8UPR|1|a|A|482
8UPR|1|a|A|483
8UPR|1|a|C|484
*
8UPR|1|a|G|496
8UPR|1|a|A|497
8UPR|1|a|G|498
8UPR|1|a|U|499
8UPR|1|a|G|500
8UPR|1|a|A|501
8UPR|1|a|A|502
8UPR|1|a|A|503
8UPR|1|a|A|504
8UPR|1|a|A|505
8UPR|1|a|G|506
8UPR|1|a|A|507
8UPR|1|a|A|508
8UPR|1|a|C|509
8UPR|1|a|C|510

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain 3

50S ribosomal protein L24

Chain z

50S ribosomal protein L20