J3_8UQL_001

3D structure

PDB id

8UQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8UQL|1|D|U|871, 8UQL|1|D|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UQL_001 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0692

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8UQL|1|D|C|826
8UQL|1|D|U|827
8UQL|1|D|U|828
8UQL|1|D|G|829
*
8UQL|1|D|C|857
8UQL|1|D|G|858
8UQL|1|D|G|859
8UQL|1|D|A|860
8UQL|1|D|G|861
*
8UQL|1|D|C|868
8UQL|1|D|G|869
8UQL|1|D|U|870
8UQL|1|D|U|871
8UQL|1|D|A|872
8UQL|1|D|A|873
8UQL|1|D|G|874

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S21

Chain G

30S ribosomal protein S2

Chain N

30S ribosomal protein S8