J3_8UQM_031

3D structure

PDB id

8UQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8UQM|1|a|U|34, 8UQM|1|a|U|448, 8UQM|1|a|C|456

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UQM_031 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.066

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8UQM|1|a|C|32
8UQM|1|a|C|33
8UQM|1|a|U|34
8UQM|1|a|G|35
*
8UQM|1|a|C|445
8UQM|1|a|G|446
8UQM|1|a|A|447
8UQM|1|a|U|448
8UQM|1|a|A|449
8UQM|1|a|G|450
8UQM|1|a|U|451
8UQM|1|a|G|452
8UQM|1|a|A|453
8UQM|1|a|A|454
8UQM|1|a|C|455
8UQM|1|a|C|456
8UQM|1|a|A|457
8UQM|1|a|G|458
8UQM|1|a|U|459
8UQM|1|a|A|460
8UQM|1|a|C|461
*
8UQM|1|a|G|468
8UQM|1|a|G|469
8UQM|1|a|A|470
8UQM|1|a|A|471
8UQM|1|a|A|472
8UQM|1|a|G|473

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23

Chain l

50S ribosomal protein L4

Chain m

50S ribosomal protein L34

Chain z

50S ribosomal protein L20