J3_8UQP_001

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8UQP|1|D|U|871, 8UQP|1|D|A|873

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UQP_001 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0692

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8UQP|1|D|C|826
8UQP|1|D|U|827
8UQP|1|D|U|828
8UQP|1|D|G|829
*
8UQP|1|D|C|857
8UQP|1|D|G|858
8UQP|1|D|G|859
8UQP|1|D|A|860
8UQP|1|D|G|861
*
8UQP|1|D|C|868
8UQP|1|D|G|869
8UQP|1|D|U|870
8UQP|1|D|U|871
8UQP|1|D|A|872
8UQP|1|D|A|873
8UQP|1|D|G|874

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S21

Chain G

30S ribosomal protein S2

Chain N

30S ribosomal protein S8