J3_8UQP_014

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8UQP|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UQP_014 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1131

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8UQP|1|a|C|1306
8UQP|1|a|A|1307
8UQP|1|a|A|1308
8UQP|1|a|G|1309
*
8UQP|1|a|C|1605
8UQP|1|a|C|1606
8UQP|1|a|C|1607
8UQP|1|a|A|1608
8UQP|1|a|A|1609
8UQP|1|a|A|1610
8UQP|1|a|C|1611
*
8UQP|1|a|G|1620
8UQP|1|a|U|1621
8UQP|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34