J3_8URM_012

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8URM_012 not in the Motif Atlas

Geometric match to J3_5J7L_069

Geometric discrepancy: 0.0803

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8URM|1|1|G|1424
8URM|1|1|G|1425
8URM|1|1|G|1426
8URM|1|1|A|1427
8URM|1|1|C|1428
8URM|1|1|G|1429
*
8URM|1|1|C|1564
8URM|1|1|C|1565
*
8URM|1|1|G|1568
8URM|1|1|A|1569
8URM|1|1|A|1570
8URM|1|1|A|1571
8URM|1|1|A|1572
8URM|1|1|G|1573
8URM|1|1|C|1574

Current chains

Chain 1

13S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2