J3_8URY_002

3D structure

PDB id

8URY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8URY_002 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0704

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

8URY|1|D|C|936
8URY|1|D|A|937
8URY|1|D|A|938
8URY|1|D|G|939
*
8URY|1|D|C|1344
8URY|1|D|U|1345
8URY|1|D|A|1346
8URY|1|D|G|1347
8URY|1|D|U|1348
8URY|1|D|A|1349
8URY|1|D|A|1350
*
8URY|1|D|U|1372
8URY|1|D|G|1373
8URY|1|D|A|1374
8URY|1|D|A|1375
8URY|1|D|U|1376
8URY|1|D|A|1377
8URY|1|D|C|1378
8URY|1|D|G|1379

Current chains

Chain D

16S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA

Chain M

30S ribosomal protein S7

Chain O

30S ribosomal protein S9