J3_8URY_009

3D structure

PDB id

8URY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

8URY|1|D|U|1240, 8URY|1|D|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8URY_009 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1228

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

8URY|1|D|C|1237
8URY|1|D|A|1238
8URY|1|D|A|1239
8URY|1|D|U|1240
8URY|1|D|G|1241
*
8URY|1|D|C|1296
8URY|1|D|G|1297
8URY|1|D|U|1298
8URY|1|D|A|1299
8URY|1|D|G|1300
8URY|1|D|U|1301
8URY|1|D|C|1302
8URY|1|D|C|1303
*
8URY|1|D|G|1334
8URY|1|D|U|1335
8URY|1|D|C|1336
8URY|1|D|G|1337

Current chains

Chain D

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S7

Chain X

30S ribosomal protein S13