J3_8UT0_002
3D structure
- PDB id
- 8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 8UT0|1|2|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UT0_002 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0799
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8UT0|1|2|A|41
8UT0|1|2|G|42
8UT0|1|2|A|43
8UT0|1|2|U|44
8UT0|1|2|U|45
8UT0|1|2|A|46
8UT0|1|2|A|47
8UT0|1|2|G|48
*
8UT0|1|2|C|431
8UT0|1|2|G|432
8UT0|1|2|C|433
8UT0|1|2|G|434
8UT0|1|2|C|435
8UT0|1|2|A|436
8UT0|1|2|A|437
8UT0|1|2|A|438
8UT0|1|2|U|439
*
8UT0|1|2|A|464
8UT0|1|2|G|465
8UT0|1|2|U|466
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SW
- 40S ribosomal protein S9-A
- Chain Sc
- 40S ribosomal protein S23-A
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