J3_8UT0_002

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

8UT0|1|2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UT0_002 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0799

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8UT0|1|2|A|41
8UT0|1|2|G|42
8UT0|1|2|A|43
8UT0|1|2|U|44
8UT0|1|2|U|45
8UT0|1|2|A|46
8UT0|1|2|A|47
8UT0|1|2|G|48
*
8UT0|1|2|C|431
8UT0|1|2|G|432
8UT0|1|2|C|433
8UT0|1|2|G|434
8UT0|1|2|C|435
8UT0|1|2|A|436
8UT0|1|2|A|437
8UT0|1|2|A|438
8UT0|1|2|U|439
*
8UT0|1|2|A|464
8UT0|1|2|G|465
8UT0|1|2|U|466

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SW

40S ribosomal protein S9-A

Chain Sc

40S ribosomal protein S23-A