J3_8UT0_014

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UT0_014 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.1081

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8UT0|1|2|U|1293
8UT0|1|2|G|1294
*
8UT0|1|2|U|1303
8UT0|1|2|G|1304
8UT0|1|2|U|1305
8UT0|1|2|C|1306
*
8UT0|1|2|G|1318
8UT0|1|2|A|1319
8UT0|1|2|U|1320
8UT0|1|2|A|1321
8UT0|1|2|A|1322

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S17-B

Chain SP

40S ribosomal protein S0-A

Chain SR

40S ribosomal protein S2