3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
UG*UGUC*GAUAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UT0_014 not in the Motif Atlas
Homologous match to J3_8P9A_081
Geometric discrepancy: 0.1081
The information below is about J3_8P9A_081
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76043.3
Basepair signature
cWW-cWW-tSS-F-F-F-F-cWW
Number of instances in this motif group
3

Unit IDs

8UT0|1|2|U|1293
8UT0|1|2|G|1294
*
8UT0|1|2|U|1303
8UT0|1|2|G|1304
8UT0|1|2|U|1305
8UT0|1|2|C|1306
*
8UT0|1|2|G|1318
8UT0|1|2|A|1319
8UT0|1|2|U|1320
8UT0|1|2|A|1321
8UT0|1|2|A|1322

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SG
40S ribosomal protein S17-B
Chain SP
40S ribosomal protein S0-A
Chain SR
40S ribosomal protein S2

Coloring options:


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