J3_8UT0_021
3D structure
- PDB id
- 8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 8UT0|1|A|U|343, 8UT0|1|A|A|351, 8UT0|1|C|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UT0_021 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0571
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
8UT0|1|A|C|340
8UT0|1|A|G|341
8UT0|1|A|A|342
8UT0|1|A|U|343
8UT0|1|A|A|344
8UT0|1|A|G|345
8UT0|1|A|C|346
8UT0|1|A|G|347
8UT0|1|A|A|348
8UT0|1|A|A|349
8UT0|1|A|C|350
8UT0|1|A|A|351
8UT0|1|A|A|352
8UT0|1|A|G|353
8UT0|1|A|U|354
8UT0|1|A|A|355
8UT0|1|A|C|356
*
8UT0|1|A|G|363
8UT0|1|A|G|364
8UT0|1|A|A|365
8UT0|1|A|A|366
8UT0|1|A|A|367
8UT0|1|A|G|368
*
8UT0|1|C|C|21
8UT0|1|C|U|22
8UT0|1|C|U|23
8UT0|1|C|G|24
Current chains
- Chain A
- 25S rRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain La
- 60S ribosomal protein L26-A
- Chain Ll
- 60S ribosomal protein L37-A
- Chain Ln
- 60S ribosomal protein L39
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1 (N-terminal 3xFLAG tag)
Coloring options: