J3_8UT0_023
3D structure
- PDB id
- 8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 8UT0|1|A|A|398, 8UT0|1|A|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UT0_023 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.0677
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8UT0|1|A|A|369
8UT0|1|A|U|370
8UT0|1|A|G|371
8UT0|1|A|A|372
8UT0|1|A|A|373
8UT0|1|A|A|374
8UT0|1|A|A|375
8UT0|1|A|G|376
8UT0|1|A|A|377
8UT0|1|A|A|378
8UT0|1|A|C|379
*
8UT0|1|A|G|390
8UT0|1|A|A|391
8UT0|1|A|G|392
8UT0|1|A|U|393
8UT0|1|A|G|394
8UT0|1|A|A|395
8UT0|1|A|A|396
8UT0|1|A|A|397
8UT0|1|A|A|398
8UT0|1|A|A|399
8UT0|1|A|G|400
8UT0|1|A|U|401
8UT0|1|A|A|402
8UT0|1|A|C|403
8UT0|1|A|G|404
*
8UT0|1|C|C|19
8UT0|1|C|U|20
Current chains
- Chain A
- 25S rRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LR
- 60S ribosomal protein L17-A
- Chain La
- 60S ribosomal protein L26-A
- Chain Ln
- 60S ribosomal protein L39
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1 (N-terminal 3xFLAG tag)
Coloring options: