3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
UU*AGAAG*CAUUUGA
Length
14 nucleotides
Bulged bases
8UT0|1|A|A|1065, 8UT0|1|A|U|1094, 8UT0|1|A|U|1095
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UT0_027 not in the Motif Atlas
Homologous match to J3_8C3A_051
Geometric discrepancy: 0.3526
The information below is about J3_8C3A_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11066.3
Basepair signature
cWW-cSS-F-F-F-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

8UT0|1|A|U|986
8UT0|1|A|U|987
*
8UT0|1|A|A|1062
8UT0|1|A|G|1063
8UT0|1|A|A|1064
8UT0|1|A|A|1065
8UT0|1|A|G|1066
*
8UT0|1|A|C|1092
8UT0|1|A|A|1093
8UT0|1|A|U|1094
8UT0|1|A|U|1095
8UT0|1|A|U|1096
8UT0|1|A|G|1097
8UT0|1|A|A|1098

Current chains

Chain A
25S rRNA

Nearby chains

Chain LI
60S ribosomal protein L7-A
Chain LV
60S ribosomal protein L21-A
Chain Ld
60S ribosomal protein L29

Coloring options:


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