J3_8UT0_028

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UT0_028 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.3867

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

8UT0|1|A|G|1230
8UT0|1|A|A|1231
8UT0|1|A|C|1232
*
8UT0|1|A|G|1256
8UT0|1|A|C|1257
8UT0|1|A|U|1258
8UT0|1|A|A|1259
8UT0|1|A|A|1260
8UT0|1|A|G|1261
8UT0|1|A|G|1262
*
8UT0|1|A|C|1277
8UT0|1|A|A|1278
8UT0|1|A|C|1279

Current chains

Chain A

25S rRNA

Nearby chains