3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
GAAA*UGAUAAC*GUC
Length
14 nucleotides
Bulged bases
8UT0|1|A|U|1840, 8UT0|1|A|A|1841
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UT0_030 not in the Motif Atlas
Homologous match to J3_8P9A_054
Geometric discrepancy: 0.0803
The information below is about J3_8P9A_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_19545.2
Basepair signature
cWW-F-F-tHS-cWW-cWW-F-F
Number of instances in this motif group
6

Unit IDs

8UT0|1|A|G|1488
8UT0|1|A|A|1489
8UT0|1|A|A|1490
8UT0|1|A|A|1491
*
8UT0|1|A|U|1837
8UT0|1|A|G|1838
8UT0|1|A|A|1839
8UT0|1|A|U|1840
8UT0|1|A|A|1841
8UT0|1|A|A|1842
8UT0|1|A|C|1843
*
8UT0|1|A|G|1852
8UT0|1|A|U|1853
8UT0|1|A|C|1854

Current chains

Chain A
25S rRNA

Nearby chains

Chain C
5.8S ribosomal RNA; 5.8S rRNA
Chain Li
60S ribosomal protein L34-A
Chain Ll
60S ribosomal protein L37-A
Chain Ln
60S ribosomal protein L39

Coloring options:


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