J3_8UTI_003

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CUAUG*CGUCAUAGAG*CGUGUG

Length

21 nucleotides

Bulged bases

8UTI|1|A|U|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UTI_003 not in the Motif Atlas

Homologous match to J3_8P9A_044

Geometric discrepancy: 0.1046

The information below is about J3_8P9A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97456.1

Basepair signature

cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8UTI|1|A|C|185
8UTI|1|A|U|186
8UTI|1|A|A|187
8UTI|1|A|U|188
8UTI|1|A|G|189
*
8UTI|1|A|C|205
8UTI|1|A|G|206
8UTI|1|A|U|207
8UTI|1|A|C|208
8UTI|1|A|A|209
8UTI|1|A|U|210
8UTI|1|A|A|211
8UTI|1|A|G|212
8UTI|1|A|A|213
8UTI|1|A|G|214
*
8UTI|1|A|C|226
8UTI|1|A|G|227
8UTI|1|A|U|228
8UTI|1|A|G|229
8UTI|1|A|U|230
8UTI|1|A|G|231

Current chains

Chain A

25S rRNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

60S ribosomal protein L4-A

Chain La

60S ribosomal protein L26-A