J3_8UTI_035

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

8UTI|1|E|A|1217, 8UTI|1|E|G|1445, 8UTI|1|E|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UTI_035 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1627

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8UTI|1|E|C|1215
8UTI|1|E|C|1216
8UTI|1|E|A|1217
8UTI|1|E|G|1218
8UTI|1|E|A|1219
8UTI|1|E|C|1220
*
8UTI|1|E|G|1263
8UTI|1|E|G|1264
8UTI|1|E|G|1265
8UTI|1|E|U|1266
8UTI|1|E|G|1267
*
8UTI|1|E|U|1442
8UTI|1|E|U|1443
8UTI|1|E|A|1444
8UTI|1|E|G|1445
8UTI|1|E|A|1446
8UTI|1|E|C|1447
8UTI|1|E|G|1448

Current chains

Chain E

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S10-A

Chain SM

40S ribosomal protein S29-A

Chain SN

40S ribosomal protein S31