J3_8UTI_040
3D structure
- PDB id
- 8UTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1 and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 8UTI|1|E|U|1473, 8UTI|1|E|G|1534, 8UTI|1|E|U|1535, 8UTI|1|E|G|1539
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UTI_040 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.2018
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8UTI|1|E|C|1470
8UTI|1|E|A|1471
8UTI|1|E|C|1472
8UTI|1|E|U|1473
8UTI|1|E|G|1474
*
8UTI|1|E|C|1533
8UTI|1|E|G|1534
8UTI|1|E|U|1535
8UTI|1|E|G|1536
8UTI|1|E|C|1537
8UTI|1|E|U|1538
8UTI|1|E|G|1539
8UTI|1|E|G|1540
*
8UTI|1|E|C|1571
8UTI|1|E|G|1572
8UTI|1|E|A|1573
8UTI|1|E|G|1574
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain AA
- 40S ribosomal protein S25-A
- Chain SB
- 40S ribosomal protein S5
- Chain SH
- 40S ribosomal protein S18-A
- Chain SI
- 40S ribosomal protein S19-A
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