J3_8UTJ_018

3D structure

PDB id

8UTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8UTJ|1|2|C|48, 8UTJ|1|2|A|50, 8UTJ|1|2|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UTJ_018 not in the Motif Atlas

Geometric match to J3_5J7L_050

Geometric discrepancy: 0.1226

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8UTJ|1|2|G|46
8UTJ|1|2|C|47
8UTJ|1|2|C|48
8UTJ|1|2|U|49
8UTJ|1|2|A|50
8UTJ|1|2|A|51
8UTJ|1|2|C|52
*
8UTJ|1|2|G|359
8UTJ|1|2|G|360
8UTJ|1|2|G|361
8UTJ|1|2|G|362
8UTJ|1|2|A|363
8UTJ|1|2|A|364
8UTJ|1|2|U|365
8UTJ|1|2|A|366
8UTJ|1|2|U|367
*
8UTJ|1|2|A|393
8UTJ|1|2|G|394
8UTJ|1|2|C|395

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS12

Chain u

30S ribosomal protein S16