J3_8UU4_012

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAA*UGCAG*CAUUAAG

Length

16 nucleotides

Bulged bases

8UU4|1|a|U|880, 8UU4|1|a|A|882

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU4_012 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1423

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8UU4|1|a|C|834
8UU4|1|a|U|835
8UU4|1|a|A|836
8UU4|1|a|A|837
*
8UU4|1|a|U|866
8UU4|1|a|G|867
8UU4|1|a|C|868
8UU4|1|a|A|869
8UU4|1|a|G|870
*
8UU4|1|a|C|877
8UU4|1|a|A|878
8UU4|1|a|U|879
8UU4|1|a|U|880
8UU4|1|a|A|881
8UU4|1|a|A|882
8UU4|1|a|G|883

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain b

Small ribosomal subunit protein uS2

Chain h

Small ribosomal subunit protein uS8