J3_8UU4_018
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GCCG
- Length
- 17 nucleotides
- Bulged bases
- 8UU4|1|a|U|1247, 8UU4|1|a|U|1309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UU4_018 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.151
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
8UU4|1|a|C|1244
8UU4|1|a|A|1245
8UU4|1|a|A|1246
8UU4|1|a|U|1247
8UU4|1|a|G|1248
*
8UU4|1|a|C|1303
8UU4|1|a|U|1304
8UU4|1|a|C|1305
8UU4|1|a|A|1306
8UU4|1|a|G|1307
8UU4|1|a|U|1308
8UU4|1|a|U|1309
8UU4|1|a|C|1310
*
8UU4|1|a|G|1341
8UU4|1|a|C|1342
8UU4|1|a|C|1343
8UU4|1|a|G|1344
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain g
- Small ribosomal subunit protein uS7
- Chain m
- Small ribosomal subunit protein uS13
Coloring options: