J3_8UU4_020
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GC*GUGAAAAGCAC*GAGUGAAACAGUUCC
- Length
- 28 nucleotides
- Bulged bases
- 8UU4|1|A|C|549, 8UU4|1|A|U|553
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UU4_020 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.2705
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8UU4|1|A|G|30
8UU4|1|A|C|31
*
8UU4|1|A|G|520
8UU4|1|A|U|521
8UU4|1|A|G|522
8UU4|1|A|A|523
8UU4|1|A|A|524
8UU4|1|A|A|525
8UU4|1|A|A|526
8UU4|1|A|G|527
8UU4|1|A|C|528
8UU4|1|A|A|529
8UU4|1|A|C|530
*
8UU4|1|A|G|541
8UU4|1|A|A|542
8UU4|1|A|G|543
8UU4|1|A|U|544
8UU4|1|A|G|545
8UU4|1|A|A|546
8UU4|1|A|A|547
8UU4|1|A|A|548
8UU4|1|A|C|549
8UU4|1|A|A|550
8UU4|1|A|G|551
8UU4|1|A|U|552
8UU4|1|A|U|553
8UU4|1|A|C|554
8UU4|1|A|C|555
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain S
- Large ribosomal subunit protein bL20
- Chain U
- Large ribosomal subunit protein uL22
- Chain W
- Large ribosomal subunit protein uL24
Coloring options: