J3_8UU5_022

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

8UU5|1|A|U|300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU5_022 not in the Motif Atlas

Homologous match to J3_4WF9_022

Geometric discrepancy: 0.158

The information below is about J3_4WF9_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8UU5|1|A|C|271
8UU5|1|A|A|272
8UU5|1|A|A|273
8UU5|1|A|A|274
8UU5|1|A|C|275
*
8UU5|1|A|G|294
8UU5|1|A|G|295
8UU5|1|A|G|296
8UU5|1|A|U|297
8UU5|1|A|U|298
8UU5|1|A|G|299
8UU5|1|A|U|300
8UU5|1|A|A|301
*
8UU5|1|A|U|415
8UU5|1|A|G|416

Current chains

Chain A

23S Ribosomal RNA

Nearby chains