J3_8UU5_028
3D structure
- PDB id
- 8UU5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CC*GUAGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 8UU5|1|A|A|2862, 8UU5|1|A|A|2864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UU5_028 not in the Motif Atlas
- Homologous match to J3_7A0S_013
- Geometric discrepancy: 0.1925
- The information below is about J3_7A0S_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8UU5|1|A|C|2843
8UU5|1|A|C|2844
*
8UU5|1|A|G|2860
8UU5|1|A|U|2861
8UU5|1|A|A|2862
8UU5|1|A|G|2863
8UU5|1|A|A|2864
8UU5|1|A|U|2865
*
8UU5|1|A|A|2911
8UU5|1|A|A|2912
8UU5|1|A|U|2913
8UU5|1|A|C|2914
8UU5|1|A|G|2915
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL32
- Chain D
- Large ribosomal subunit protein uL3
- Chain P
- Large ribosomal subunit protein bL17
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