J3_8UU7_020
3D structure
- PDB id
- 8UU7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GC*GUGAAAAGCAC*GAGUGAAACAGUUCC
- Length
- 28 nucleotides
- Bulged bases
- 8UU7|1|A|C|549, 8UU7|1|A|U|553
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UU7_020 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.2643
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8UU7|1|A|G|30
8UU7|1|A|C|31
*
8UU7|1|A|G|520
8UU7|1|A|U|521
8UU7|1|A|G|522
8UU7|1|A|A|523
8UU7|1|A|A|524
8UU7|1|A|A|525
8UU7|1|A|A|526
8UU7|1|A|G|527
8UU7|1|A|C|528
8UU7|1|A|A|529
8UU7|1|A|C|530
*
8UU7|1|A|G|541
8UU7|1|A|A|542
8UU7|1|A|G|543
8UU7|1|A|U|544
8UU7|1|A|G|545
8UU7|1|A|A|546
8UU7|1|A|A|547
8UU7|1|A|A|548
8UU7|1|A|C|549
8UU7|1|A|A|550
8UU7|1|A|G|551
8UU7|1|A|U|552
8UU7|1|A|U|553
8UU7|1|A|C|554
8UU7|1|A|C|555
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain S
- Large ribosomal subunit protein bL20
- Chain U
- Large ribosomal subunit protein uL22
- Chain W
- Large ribosomal subunit protein uL24
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