J3_8UU8_004

3D structure

PDB id

8UU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGA*UUGAAAG*CAC

Length

13 nucleotides

Bulged bases

8UU8|1|A|A|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU8_004 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.3001

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

8UU8|1|A|G|1101
8UU8|1|A|G|1102
8UU8|1|A|A|1103
*
8UU8|1|A|U|1127
8UU8|1|A|U|1128
8UU8|1|A|G|1129
8UU8|1|A|A|1130
8UU8|1|A|A|1131
8UU8|1|A|A|1132
8UU8|1|A|G|1133
*
8UU8|1|A|C|1148
8UU8|1|A|A|1149
8UU8|1|A|C|1150

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein uL11

Chain I

Large ribosomal subunit protein uL10