J3_8UU8_006

3D structure

PDB id

8UU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

8UU8|1|A|A|1658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU8_006 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.096

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

8UU8|1|A|C|1349
8UU8|1|A|U|1350
8UU8|1|A|A|1351
8UU8|1|A|A|1352
8UU8|1|A|G|1353
*
8UU8|1|A|C|1654
8UU8|1|A|G|1655
8UU8|1|A|C|1656
8UU8|1|A|A|1657
8UU8|1|A|A|1658
8UU8|1|A|A|1659
8UU8|1|A|C|1660
*
8UU8|1|A|G|1669
8UU8|1|A|U|1670
8UU8|1|A|A|1671
8UU8|1|A|G|1672

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34