J3_8UU8_035

3D structure

PDB id

8UU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGA*UGACUGC*GAGGAAGGUG

Length

20 nucleotides

Bulged bases

8UU8|1|a|U|1190

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU8_035 not in the Motif Atlas

Homologous match to J3_4LFB_018

Geometric discrepancy: 0.2224

The information below is about J3_4LFB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_40706.1

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8UU8|1|a|U|1125
8UU8|1|a|G|1126
8UU8|1|a|A|1127
*
8UU8|1|a|U|1163
8UU8|1|a|G|1164
8UU8|1|a|A|1165
8UU8|1|a|C|1166
8UU8|1|a|U|1167
8UU8|1|a|G|1168
8UU8|1|a|C|1169
*
8UU8|1|a|G|1182
8UU8|1|a|A|1183
8UU8|1|a|G|1184
8UU8|1|a|G|1185
8UU8|1|a|A|1186
8UU8|1|a|A|1187
8UU8|1|a|G|1188
8UU8|1|a|G|1189
8UU8|1|a|U|1190
8UU8|1|a|G|1191

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain b

Small ribosomal subunit protein uS2

Chain i

Small ribosomal subunit protein uS9