J3_8UU9_004

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGA*UUGAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU9_004 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.2169

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

8UU9|1|A|G|1101
8UU9|1|A|G|1102
8UU9|1|A|A|1103
*
8UU9|1|A|U|1127
8UU9|1|A|U|1128
8UU9|1|A|G|1129
8UU9|1|A|A|1130
8UU9|1|A|A|1131
8UU9|1|A|A|1132
8UU9|1|A|G|1133
*
8UU9|1|A|C|1148
8UU9|1|A|A|1149
8UU9|1|A|C|1150

Current chains

Chain A

23S Ribosomal RNA

Nearby chains