J3_8UU9_013
3D structure
- PDB id
- 8UU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UU9_013 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.1242
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.1
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8UU9|1|a|U|952
8UU9|1|a|G|953
8UU9|1|a|G|954
8UU9|1|a|A|955
*
8UU9|1|a|U|1242
8UU9|1|a|A|1243
8UU9|1|a|C|1244
*
8UU9|1|a|G|1344
8UU9|1|a|G|1345
8UU9|1|a|A|1346
8UU9|1|a|A|1347
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain i
- Small ribosomal subunit protein uS9
- Chain m
- Small ribosomal subunit protein uS13
- Chain x
- Transfer RNA; tRNA
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