J3_8UU9_023

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

8UU9|1|A|U|300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU9_023 not in the Motif Atlas

Homologous match to J3_4WF9_022

Geometric discrepancy: 0.1548

The information below is about J3_4WF9_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8UU9|1|A|C|271
8UU9|1|A|A|272
8UU9|1|A|A|273
8UU9|1|A|A|274
8UU9|1|A|C|275
*
8UU9|1|A|G|294
8UU9|1|A|G|295
8UU9|1|A|G|296
8UU9|1|A|U|297
8UU9|1|A|U|298
8UU9|1|A|G|299
8UU9|1|A|U|300
8UU9|1|A|A|301
*
8UU9|1|A|U|415
8UU9|1|A|G|416

Current chains

Chain A

23S Ribosomal RNA

Nearby chains