J3_8UU9_029

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GUAGAU*AAUCG

Length

13 nucleotides

Bulged bases

8UU9|1|A|A|2862, 8UU9|1|A|A|2864

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU9_029 not in the Motif Atlas

Homologous match to J3_9DFE_019

Geometric discrepancy: 0.2001

The information below is about J3_9DFE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8UU9|1|A|C|2843
8UU9|1|A|C|2844
*
8UU9|1|A|G|2860
8UU9|1|A|U|2861
8UU9|1|A|A|2862
8UU9|1|A|G|2863
8UU9|1|A|A|2864
8UU9|1|A|U|2865
*
8UU9|1|A|A|2911
8UU9|1|A|A|2912
8UU9|1|A|U|2913
8UU9|1|A|C|2914
8UU9|1|A|G|2915

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL32

Chain D

Large ribosomal subunit protein uL3

Chain P

Large ribosomal subunit protein bL17