J3_8UVS_026

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8UVS|1|2a|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UVS_026 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0872

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

8UVS|1|2a|C|826
8UVS|1|2a|U|827
8UVS|1|2a|A|828
8UVS|1|2a|G|829
*
8UVS|1|2a|C|857
8UVS|1|2a|G|858
8UVS|1|2a|A|859
8UVS|1|2a|A|860
8UVS|1|2a|G|861
*
8UVS|1|2a|C|868
8UVS|1|2a|G|869
8UVS|1|2a|U|870
8UVS|1|2a|U|871
8UVS|1|2a|A|872
8UVS|1|2a|A|873
8UVS|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2e

30S ribosomal protein S5

Chain 2h

30S ribosomal protein S8