J3_8UVS_037

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8UVS|1|1A|U|448, 8UVS|1|1A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UVS_037 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0649

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

8UVS|1|1A|C|32
8UVS|1|1A|U|33
8UVS|1|1A|C|34
8UVS|1|1A|G|35
*
8UVS|1|1A|C|445
8UVS|1|1A|G|446
8UVS|1|1A|A|447
8UVS|1|1A|U|448
8UVS|1|1A|A|449
8UVS|1|1A|G|450
8UVS|1|1A|C|451
8UVS|1|1A|G|452
8UVS|1|1A|C|453
8UVS|1|1A|A|454
8UVS|1|1A|C|455
8UVS|1|1A|C|456
8UVS|1|1A|A|457
8UVS|1|1A|G|458
8UVS|1|1A|U|459
8UVS|1|1A|A|460
8UVS|1|1A|C|461
*
8UVS|1|1A|G|468
8UVS|1|1A|G|469
8UVS|1|1A|A|470
8UVS|1|1A|A|471
8UVS|1|1A|A|472
8UVS|1|1A|G|473

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L20

Chain 1X

50S ribosomal protein L23