J3_8UXA_023
3D structure
- PDB id
- 8UXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAA*UAAA*UGAAAG
- Length
- 13 nucleotides
- Bulged bases
- 8UXA|1|AL|A|938
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UXA_023 not in the Motif Atlas
- Geometric match to J3_7A0S_007
- Geometric discrepancy: 0.2778
- The information below is about J3_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47341.1
- Basepair signature
- cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8UXA|1|AL|C|891
8UXA|1|AL|A|892
8UXA|1|AL|A|893
*
8UXA|1|AL|U|924
8UXA|1|AL|A|925
8UXA|1|AL|A|926
8UXA|1|AL|A|927
*
8UXA|1|AL|U|934
8UXA|1|AL|G|935
8UXA|1|AL|A|936
8UXA|1|AL|A|937
8UXA|1|AL|A|938
8UXA|1|AL|G|939
Current chains
- Chain AL
- Small ribosomal subunit rRNA
Nearby chains
- Chain AG
- Small ribosomal subunit protein mS23
- Chain Z
- Small ribosomal subunit protein mS37
- Chain h
- Small ribosomal subunit protein uS2m
- Chain k
- Small ribosomal subunit protein uS5m
- Chain n
- 37S ribosomal protein S8, mitochondrial
Coloring options: