J3_8UXA_029
3D structure
- PDB id
- 8UXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUUAG*CAAAACU*AAUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 8UXA|1|AL|U|1222
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UXA_029 not in the Motif Atlas
- Homologous match to J3_6CZR_023
- Geometric discrepancy: 0.2797
- The information below is about J3_6CZR_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.2
- Basepair signature
- cWW-F-F-F-tHW-F-F-F-tSS-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8UXA|1|AL|C|1110
8UXA|1|AL|U|1111
8UXA|1|AL|U|1112
8UXA|1|AL|U|1113
8UXA|1|AL|A|1114
8UXA|1|AL|G|1115
*
8UXA|1|AL|C|1154
8UXA|1|AL|A|1155
8UXA|1|AL|A|1156
8UXA|1|AL|A|1157
8UXA|1|AL|A|1158
8UXA|1|AL|C|1159
8UXA|1|AL|U|1160
*
8UXA|1|AL|A|1219
8UXA|1|AL|A|1220
8UXA|1|AL|U|1221
8UXA|1|AL|U|1222
8UXA|1|AL|A|1223
8UXA|1|AL|A|1224
8UXA|1|AL|G|1225
Current chains
- Chain AL
- Small ribosomal subunit rRNA
Nearby chains
- Chain i
- Ribosomal protein VAR1, mitochondrial
- Chain k
- Small ribosomal subunit protein uS5m
- Chain o
- Small ribosomal subunit protein uS9m
- Chain p
- Small ribosomal subunit protein uS10m
- Chain t
- 37S ribosomal protein MRP2, mitochondrial
Coloring options: