J3_8UZ3_018

3D structure

PDB id

8UZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8UZ3|1|2|C|48, 8UZ3|1|2|A|50, 8UZ3|1|2|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UZ3_018 not in the Motif Atlas

Geometric match to J3_4LFB_014

Geometric discrepancy: 0.1976

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8UZ3|1|2|G|46
8UZ3|1|2|C|47
8UZ3|1|2|C|48
8UZ3|1|2|U|49
8UZ3|1|2|A|50
8UZ3|1|2|A|51
8UZ3|1|2|C|52
*
8UZ3|1|2|G|359
8UZ3|1|2|G|360
8UZ3|1|2|G|361
8UZ3|1|2|G|362
8UZ3|1|2|A|363
8UZ3|1|2|A|364
8UZ3|1|2|U|365
8UZ3|1|2|A|366
8UZ3|1|2|U|367
*
8UZ3|1|2|A|393
8UZ3|1|2|G|394
8UZ3|1|2|C|395

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain u

30S ribosomal protein S16