J3_8V03_012

3D structure

PDB id

8V03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8V03_012 not in the Motif Atlas

Geometric match to J3_5J7L_069

Geometric discrepancy: 0.1112

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8V03|1|1|G|1424
8V03|1|1|G|1425
8V03|1|1|G|1426
8V03|1|1|A|1427
8V03|1|1|C|1428
8V03|1|1|G|1429
*
8V03|1|1|C|1564
8V03|1|1|C|1565
*
8V03|1|1|G|1568
8V03|1|1|A|1569
8V03|1|1|A|1570
8V03|1|1|A|1571
8V03|1|1|A|1572
8V03|1|1|G|1573
8V03|1|1|C|1574

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2