J3_8V03_023

3D structure

PDB id

8V03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8V03|1|2|U|871, 8V03|1|2|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8V03_023 not in the Motif Atlas

Geometric match to J3_5J7L_004

Geometric discrepancy: 0.1202

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8V03|1|2|C|826
8V03|1|2|U|827
8V03|1|2|U|828
8V03|1|2|G|829
*
8V03|1|2|C|857
8V03|1|2|G|858
8V03|1|2|G|859
8V03|1|2|A|860
8V03|1|2|G|861
*
8V03|1|2|C|868
8V03|1|2|G|869
8V03|1|2|U|870
8V03|1|2|U|871
8V03|1|2|A|872
8V03|1|2|A|873
8V03|1|2|G|874

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain m

Small ribosomal subunit protein uS8

Chain z

30S ribosomal protein S21