J3_8V03_032

3D structure

PDB id

8V03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

8V03|1|2|U|1240, 8V03|1|2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8V03_032 not in the Motif Atlas

Geometric match to J3_4LFB_009

Geometric discrepancy: 0.2544

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8V03|1|2|C|1237
8V03|1|2|A|1238
8V03|1|2|A|1239
8V03|1|2|U|1240
8V03|1|2|G|1241
*
8V03|1|2|C|1296
8V03|1|2|G|1297
8V03|1|2|U|1298
8V03|1|2|A|1299
8V03|1|2|G|1300
8V03|1|2|U|1301
8V03|1|2|C|1302
8V03|1|2|C|1303
*
8V03|1|2|G|1334
8V03|1|2|U|1335
8V03|1|2|C|1336
8V03|1|2|G|1337

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain r

30S ribosomal protein S13