J3_8V83_007

3D structure

PDB id

8V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

CGAUAGCGAACAAGUAC*GGAAAG*CUUG

Length

27 nucleotides

Bulged bases

8V83|1|1|U|343, 8V83|1|1|A|351, 8V83|1|2|U|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8V83_007 not in the Motif Atlas

Homologous match to J3_8P9A_045

Geometric discrepancy: 0.1212

The information below is about J3_8P9A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8V83|1|1|C|340
8V83|1|1|G|341
8V83|1|1|A|342
8V83|1|1|U|343
8V83|1|1|A|344
8V83|1|1|G|345
8V83|1|1|C|346
8V83|1|1|G|347
8V83|1|1|A|348
8V83|1|1|A|349
8V83|1|1|C|350
8V83|1|1|A|351
8V83|1|1|A|352
8V83|1|1|G|353
8V83|1|1|U|354
8V83|1|1|A|355
8V83|1|1|C|356
*
8V83|1|1|G|363
8V83|1|1|G|364
8V83|1|1|A|365
8V83|1|1|A|366
8V83|1|1|A|367
8V83|1|1|G|368
*
8V83|1|2|C|21
8V83|1|2|U|22
8V83|1|2|U|23
8V83|1|2|G|24

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA

Chain 2

Saccharomyces cerevisiae S288C 5.8S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain Y

60S ribosomal protein L26-A

Chain j

60S ribosomal protein L37-A

Chain v

Nucleolar protein 16

Chain x

Ribosome production factor 1